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Identifying Donepezil-Like Compounds Against Acetylcholinesterase Using Molecular Docking, Dynamic Simulation, ADMET, and PCA: Therapeutic Management of Alzheimer’s Disease

  • Yinsheng Yang
  • , Akhtar Atiya
  • , Mohammed Alrouji
  • , Mohammed S. Alshammari
  • , Sharaf E. Sharaf
  • , Dharmendra Kumar Yadav
  • , Saad Ali Alshehri
  • , Moyad Shahwan
  • , Anas Shamsi
  • Children’s Hospital of Shanxi (Women Health Center of Shanxi)
  • King Khalid University
  • Shaqra University
  • Umm Al-Qura University
  • Gachon University
  • Chulalongkorn University

Research output: Contribution to journalArticlepeer-review

Abstract

Alzheimer’s disease (AD) is a significant concern in the elderly, characterized by impaired cholinergic transmission,decreased choline acetyltransferase activity and increased acetylcholinesterase (AChE) activity, resulting in reduced acetylcholine levels. First-generation AChE inhibitors (AChEIs), including tacrine, and second-generation agents, such as donepezil, galantamine, and rivastigmine, offer only limited symptomatic relief. More comprehensive drug treatment plans are in demand. AChE, crucial for acetylcholine regulation, is a key focus due to its altered activity in AD. Enhancing cholinergic activity via AChEIs remains a viable strategy, exemplified by Donepezil. However, the effectiveness of Donepezil as an AD therapeutic is limited by various side effects and solubility issues. In this study, we used a structure-guided strategy to screen Donepezil analogs for the identification of potential compounds for AChE inhibition. We identified two Donepezil-like compounds (PubChem CIDs 14553578 and 19820656) that show a higher predicted binding affinity and stability with AChE in our in silico workflow compared with Donepezil. These findings are computational and hypothesis-generating; experimental biochemical and pharmacological validation, such as in vitro enzymatic IC50 determinations, cellular ADME/Tox profiling, and in vivo studies, will be required to confirm biological activity and therapeutic potential.

Original languageEnglish
Article number2537269
JournalJournal of Chemistry
Volume2025
Issue number1
DOIs
StatePublished - 2025

Keywords

  • Alzheimer’s disease
  • acetylcholinesterase inhibitors
  • binding affinity
  • donepezil analogs
  • molecular dynamics simulation
  • virtual screening

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