Skip to main navigation Skip to search Skip to main content

Clinically acquired new challenging dataset for brain SOL segmentation: AJBDS-2023

  • Javaria Amin
  • , Muhammad Almas Anjum
  • , Nadia Gul
  • , Muhammad Sharif
  • , Seifedine Kadry
  • University of Wah
  • National University of Technology
  • Consultant Radiologist POF hospital and Associate Professor of Radiology Wah Medical College
  • COMSATS University Islamabad
  • Noroff University College
  • Lebanese American University
  • Middle East University, Jordan

Research output: Contribution to journalArticlepeer-review

4 Scopus citations

Abstract

Space-occupying lesions (SOL) brain detected on brain MRI are benign and malignant tumors. Several brain tumor segmentation algorithms have been developed but there is a need for a clinically acquired dataset that is used for real-time images. This research is done to facilitate reporting of MRI done for brain tumor detection by incorporating computer-aided detection. Another objective was to make reporting unbiased by decreasing inter-observer errors and expediting daily reporting sessions to decrease radiologists’ workload. This is an experimental study. The proposed dataset contains clinically acquired multiplanar, multi-sequential MRI slices (MPMSI) which are used as input to the segmentation model without any preprocessing. The proposed AJBDS-2023 consists of 10667 images of real patients imaging data with a size of 320*320*3. Acquired images have T1W, TW2, Flair, T1W contrast, ADC, and DWI sequences. Pixel-based ground-truth annotated images of the tumor core and edema of 6334 slices are made manually under the supervision of a radiologist. Quantitative assessment of AJBDS-2023 images is done by a novel U-network on 4333 MRI slices. The diagnostic accuracy of our algorithm U-Net trained on AJBDS-2023 was 77.4 precision, 82.3 DSC, 87.4 specificity, 93.8 sensitivity, and 90.4 confidence interval. An experimental analysis of AJBDS-2023 done by the U-Net segmentation model proves that the proposed AJBDS-2023 dataset has images without preprocessing, which is more challenging and provides a more realistic platform for evaluation and analysis of newly developed algorithms in this domain and helps radiologists in MRI brain reporting more realistically.

Original languageEnglish
Article number109915
JournalData in Brief
Volume52
DOIs
StatePublished - Feb 2024
Externally publishedYes

Keywords

  • Algorithm
  • Almas Javeria Brain dataset (AJBDS)-2023
  • Multiplanar multi-sequential images (MPMSI)
  • Segmentation

Fingerprint

Dive into the research topics of 'Clinically acquired new challenging dataset for brain SOL segmentation: AJBDS-2023'. Together they form a unique fingerprint.

Cite this