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An integrated computational biology approach defines the crucial role of TRIP13 in pancreatic cancer

  • Swati Dhasmana
  • , Anupam Dhasmana
  • , Stella Rios
  • , Iris A. Enriquez-Perez
  • , Sheema Khan
  • , Farrukh Afaq
  • , Shafiul Haque
  • , Upender Manne
  • , Murali M. Yallapu
  • , Subhash C. Chauhan
  • University of Texas Rio Grande Valley
  • University of Alabama at Birmingham
  • Jazan University
  • Lebanese American University

Research output: Contribution to journalArticlepeer-review

2 Scopus citations

Abstract

Pancreatic cancer (PanCa) is one of the most aggressive forms of cancer and its incidence rate is continuously increasing every year. It is expected that by 2030, PanCa will become the 2nd leading cause of cancer-related deaths in the United States due to the lack of early diagnosis and extremely poor survival. Despite great advancements in biomedical research, there are very limited early diagnostic modalities available for the early detection of PanCa. Thus, understanding of disease biology and identification of newer diagnostic and therapeutic modalities are high priority. Herein, we have utilized high dimensional omics data along with some wet laboratory experiments to decipher the expression level of hormone receptor interactor 13 (TRIP13) in various pathological staging including functional enrichment analysis. The functional enrichment analyses specifically suggest that TRIP13 and its related oncogenic network genes are involved in very important patho-physiological pathways. These analyses are supported by qPCR, immunoblotting and IHC analysis. Based on our study we proposed TRIP13 as a novel molecular target for PanCa diagnosis and therapeutic interventions. Overall, we have demonstrated a crucial role of TRIP13 in pathogenic events and progression of PanCa through applied integrated computational biology approaches.

Original languageEnglish
Pages (from-to)5765-5775
Number of pages11
JournalComputational and Structural Biotechnology Journal
Volume21
DOIs
StatePublished - Jan 2023

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Keywords

  • Computational biology
  • Early events of cancer
  • Integrative Biology
  • Pancreatic cancer
  • TRIP13
  • Transcriptomics

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